If you’re searching for a delightful dessert that beautifully blends creamy, tangy cheesecake with the warm, cozy flavors of spiced apples and crumbly crisp topping, this Apple Crisp Mini Cheesecakes Recipe is exactly what you need. These little beauties are charmingly portioned, making them perfect for sharing or indulging solo, and they manage to capture the essence of fall in every bite. The combination of tender baked apples, smooth cheesecake filling, and a buttery crisp topping creates a symphony of textures and tastes that will have you smiling from the very first forkful.

Ingredients You’ll Need
Gathering your ingredients is easier than you think, and each one plays a crucial role in crafting the perfect balance of flavors and textures in this Apple Crisp Mini Cheesecakes Recipe. From the buttery graham cracker crust to the luscious cream cheese filling and that irresistible crisp topping, every component brings something special to the table.
- 1 ½ cups graham cracker crumbs: Provides a crunchy and slightly sweet base for the mini cheesecakes.
- 2 tablespoons melted butter: Binds the graham cracker crumbs together and adds richness.
- 1/4 cup brown sugar: Adds a deep caramel sweetness to the crust.
- 2 medium apples, peeled, cored, and diced: Using Granny Smith or Honeycrisp for a perfect balance of tart and sweet flavors.
- 1 tablespoon butter: For sautéing the apples and bringing out their natural sweetness.
- 2 tablespoons brown sugar: Sweetens and caramelizes the apples as they cook.
- 1/2 teaspoon cinnamon: Adds warm spice that’s classic in apple desserts.
- 1/4 teaspoon nutmeg: Provides a subtle, nutty spice note.
- 1 teaspoon lemon juice: Brightens the apple filling and balances sweetness.
- 16 oz cream cheese, softened: The rich, creamy heart of the cheesecake layer.
- 1/2 cup sour cream: Adds tang and a silky texture to the cheesecake filling.
- 1/2 cup granulated sugar: Sweetens the cheesecake filling without overpowering the other flavors.
- 2 teaspoons vanilla extract: Enhances the overall flavor and aroma.
- 2 large eggs: Bind the cheesecake filling and give it structure.
- 1/2 cup old-fashioned oats: Creates a delightfully crisp topping with a hearty texture.
- 1/4 cup flour: Helps hold the crisp topping together.
- 1/4 cup brown sugar: Gives the topping its signature caramel flavor.
- 1/4 cup cold butter, cubed: Cut into the topping for a buttery crunch.
- Pinch of salt: Balances sweetness and enhances all the flavors.
How to Make Apple Crisp Mini Cheesecakes Recipe
Step 1: Prepare the Cheesecake Base
Start by preheating your oven to 325°F (165°C) and lining a muffin tin with cupcake liners to keep the mini cheesecakes neat and easy to remove. Combine the graham cracker crumbs, melted butter, and brown sugar in a bowl until the mixture resembles wet sand. Press this mixture firmly at the bottom of each muffin cup to form a sturdy crust that will hold all those delicious layers to come.
Step 2: Make the Apple Filling
Next, melt butter in a small saucepan over medium heat and add the diced apples, brown sugar, cinnamon, nutmeg, and lemon juice. Stir occasionally and cook for 5 to 7 minutes until the apples soften and develop a lovely caramelized sheen. Once fragrant and tender, remove the pan from the heat and let your apple filling cool to room temperature so it won’t melt the cheesecake layer later.
Step 3: Prepare the Cheesecake Filling
In a large bowl, beat the softened cream cheese until it’s completely smooth—no lumps here! Blend in the sour cream, granulated sugar, and vanilla extract until creamy and well combined. Then, incorporate the eggs one at a time, mixing gently after each addition to maintain a silky texture. This smooth filling is the star, offering the bright creaminess that balances the sweet apple topping.
Step 4: Assemble the Mini Cheesecakes
Now the fun part: spoon the cheesecake filling evenly over your graham cracker crusts in the muffin tin, filling each cup nearly to the top. Then dollop a generous spoonful of the apple mixture on top of the cheesecake layer—this lovely fruit layer will infuse every bite with fresh, warm apple flavor.
Step 5: Make the Crisp Topping
For the finishing touch, mix oats, flour, brown sugar, and salt in a small bowl. Using a pastry cutter or your fingers, cut the cold, cubed butter into the oat mixture until coarse crumbs form. Sprinkle this crumbly topping evenly over the apple filling on each mini cheesecake, promising a satisfying crunch once baked.
Step 6: Bake
Bake your assembled cheesecakes in the oven for 20 to 25 minutes, or until the cheesecake layers are set and the crisp topping is a golden brown. After removing from the oven, let them cool completely in the pan to room temperature, then pop the entire tray into the fridge for at least two hours. This chilling step helps the flavors meld and the texture firm up just perfectly.
Step 7: Serve and Enjoy
Gently peel away the cupcake liners and transfer the Apple Crisp Mini Cheesecakes to a pretty serving platter. Serve them chilled for the ultimate creamy, crisp, and fruity bite. Get ready to impress your friends and family with these individual-sized delights that are almost too cute to eat—almost!
How to Serve Apple Crisp Mini Cheesecakes Recipe

Garnishes
To amp up that wow factor, consider a sprinkle of powdered sugar over the crisps or a small dollop of whipped cream with a pinch of cinnamon. Chopped toasted pecans or walnuts add a lovely nutty crunch that pairs beautifully with the apple and crisp. A drizzle of caramel sauce is a luxurious bonus that echoes the dessert’s warm, sweet tones perfectly.
Side Dishes
These mini cheesecakes shine beautifully as a standalone treat, but you can also serve them alongside a cup of spiced chai tea or robust coffee to complement the flavors. For a breakfast or brunch twist, pair with a fresh fruit salad or a scoop of vanilla ice cream to make it feel like a special celebration.
Creative Ways to Present
If you’re hosting a gathering, display these mini cheesecakes on tiered dessert stands to elevate their visual appeal. Alternatively, place each one in a small glass jar for portable, rustic charm. For a fun, interactive dessert bar, invite guests to top their own with chopped nuts, caramel drizzle, or cinnamon sugar—everyone loves a little personalization!
Make Ahead and Storage
Storing Leftovers
Once cooled, store any leftover Apple Crisp Mini Cheesecakes in an airtight container in the refrigerator. They will keep their fresh flavor and creamy texture for up to 4 days, making them a convenient treat to enjoy later or pack for dessert on the go.
Freezing
If you’d like to keep these treats longer, freezing is a great option. Place them on a baking sheet to freeze individually for a couple hours, then transfer to a resealable freezer bag or airtight container. Frozen mini cheesecakes can be stored for up to 2 months. Just thaw overnight in the fridge before serving to restore their creamy, luscious consistency.
Reheating
When ready to enjoy after freezing, there’s no need to heat these little gems since cheesecake is best served chilled. If you prefer a slightly warmer dessert, let them sit at room temperature for 20 to 30 minutes to take the chill off without melting the crisp topping.
FAQs
Can I make this Apple Crisp Mini Cheesecakes Recipe vegan?
While this recipe relies heavily on cream cheese and eggs for its texture and flavor, you could experiment with vegan cream cheese alternatives and egg substitutes. However, the texture and taste may differ significantly from the original, so be prepared for some adjustments.
What type of apples work best in this recipe?
Granny Smith and Honeycrisp apples are ideal because they maintain some firmness when cooked and offer a nice balance of tartness and sweetness. Avoid overly soft or mealy apples to keep the filling texture just right.
Can I use pre-made graham cracker crumbs?
Absolutely! Pre-packaged graham cracker crumbs work perfectly and save you time. Just be sure to measure accurately to maintain the right crust texture.
Is it possible to make these mini cheesecakes gluten-free?
Yes, substitute the graham cracker crumbs and flour with gluten-free alternatives. Many stores offer gluten-free graham cracker crumbs and all-purpose gluten-free flours that work well in this recipe.
How do I prevent the cheesecake from cracking?
To avoid cracks, ensure that the cream cheese is completely softened and that you mix the batter gently until just combined—overmixing can incorporate too much air. Baking at a moderate temperature and chilling thoroughly before serving also helps maintain a smooth surface.
Final Thoughts
There’s something genuinely magical about this Apple Crisp Mini Cheesecakes Recipe—it brings together familiar flavors in a charming, individual-sized dessert that’s perfect for sharing, gifting, or simply savoring whenever you need a little joy. Once you try it, you may find yourself reaching for it again and again whenever you want a heartwarming treat that feels special but never fussy. Go ahead, whisk up a batch and watch these mini marvels disappear with smiles all around!
Print
Apple Crisp Mini Cheesecakes Recipe
- Prep Time: 20 minutes
- Cook Time: 25 minutes
- Total Time: 45 minutes (plus 2 hours chilling)
- Yield: 12 servings
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
Delight in these Apple Crisp Mini Cheesecakes, a perfect blend of creamy cheesecake and warm, spiced apple topping with a crunchy oat crisp. Individually portioned for easy serving, they combine graham cracker crusts with caramelized apple filling and a buttery crisp topping, baked to perfection. Ideal for dessert lovers looking for a comforting yet elegant treat.
Ingredients
Crust
- 1 ½ cups graham cracker crumbs
- 2 tablespoons melted butter
- 1/4 cup brown sugar
Apple Filling
- 2 medium apples, peeled, cored, and diced (Granny Smith or Honeycrisp)
- 1 tablespoon butter
- 2 tablespoons brown sugar
- 1/2 teaspoon cinnamon
- 1/4 teaspoon nutmeg
- 1 teaspoon lemon juice
Cheesecake Filling
- 16 oz cream cheese, softened
- 1/2 cup sour cream
- 1/2 cup granulated sugar
- 2 teaspoons vanilla extract
- 2 large eggs
Crisp Topping
- 1/2 cup old-fashioned oats
- 1/4 cup flour
- 1/4 cup brown sugar
- 1/4 cup cold butter, cubed
- Pinch of salt
Instructions
- Prepare the Cheesecake Base: Preheat your oven to 325°F (165°C) and line a muffin tin with cupcake liners. In a medium bowl, mix together graham cracker crumbs, melted butter, and brown sugar. Press this mixture firmly into the bottom of each liner to form the crust layer for the mini cheesecakes.
- Make the Apple Filling: Melt butter in a small saucepan over medium heat. Add diced apples, brown sugar, cinnamon, nutmeg, and lemon juice. Cook for 5-7 minutes, stirring occasionally until apples are softened and caramelized. Remove from heat and let cool.
- Prepare the Cheesecake Filling: In a large bowl, beat softened cream cheese until smooth and creamy. Add sour cream, granulated sugar, and vanilla extract, then beat again until well combined. Add eggs one at a time, beating lightly after each addition just until incorporated.
- Assemble the Mini Cheesecakes: Spoon the cheesecake filling evenly over the graham cracker crusts in the muffin tin. Then, top each portion with a spoonful of the cooled apple mixture.
- Make the Crisp Topping: In a small bowl, combine oats, flour, brown sugar, and a pinch of salt. Cut in the cold cubed butter with a pastry cutter or fingers until the mixture forms coarse crumbs. Sprinkle this evenly over the apple topping on each mini cheesecake.
- Bake: Place the muffin tin in the preheated oven and bake for 20-25 minutes, or until the cheesecakes are set in the middle and the crisp topping is golden brown. Remove from oven and allow to cool completely in the pan.
- Chill and Serve: Once cooled, refrigerate the mini cheesecakes for at least 2 hours to ensure they are fully set. Remove from muffin tin and serve chilled. Enjoy your delicious apple crisp mini cheesecakes!
Notes
- You can substitute apples with pears for a different flavor profile.
- For an extra crunch, add chopped nuts like pecans or walnuts to the crisp topping.
- Make sure the cream cheese is thoroughly softened to avoid lumps in the cheesecake filling.
- Allow the cheesecakes to cool completely before refrigerating to prevent condensation from making the topping soggy.
- Store leftovers in an airtight container in the refrigerator for up to 3 days.

